diff --git a/common/geodata/domain_matcher.go b/common/geodata/domain_matcher.go
index c9e67702..731e2c16 100644
--- a/common/geodata/domain_matcher.go
+++ b/common/geodata/domain_matcher.go
@@ -95,48 +95,43 @@ func (f *CompactDomainMatcherFactory) BuildMatcher(rules []*DomainRule) (DomainM
 		matchers: make([]strmatcher.MatcherGroup, 0, len(rules)),
 		values:   make([]uint32, 0, len(rules)),
 	}
-	custom := strmatcher.NewLinearValueMatcher()
-	var idx uint32
-	for _, r := range rules {
+	for i, r := range rules {
 		switch v := r.Value.(type) {
 		case *DomainRule_Custom:
 			m, err := parseDomain(v.Custom)
 			if err != nil {
 				return nil, err
 			}
-			custom.Add(m, 0)
+			if compact.custom == nil {
+				compact.custom = strmatcher.NewLinearValueMatcher()
+			}
+			compact.custom.Add(m, uint32(i))
 		case *DomainRule_Geosite:
 			m, err := f.getOrCreateFrom(v.Geosite)
 			if err != nil {
 				return nil, err
 			}
 			compact.matchers = append(compact.matchers, m)
-			compact.values = append(compact.values, idx)
-			idx++
+			compact.values = append(compact.values, uint32(i))
 		default:
 			panic("unknown domain rule type")
 		}
 	}
-	if len(compact.matchers) != len(rules) {
-		compact.matchers = append(compact.matchers, custom)
-		compact.values = append(compact.values, idx+1)
-	}
 	return compact, nil
 }
 
 type CompactDomainMatcher struct {
+	custom   strmatcher.ValueMatcher
 	matchers []strmatcher.MatcherGroup
 	values   []uint32
 }
 
-func (c *CompactDomainMatcher) Add(matcher strmatcher.MatcherGroup, value uint32) {
-	c.matchers = append(c.matchers, matcher)
-	c.values = append(c.values, value)
-}
-
 // Match implements DomainMatcher.
 func (c *CompactDomainMatcher) Match(input string) []uint32 {
-	result := make([]uint32, 0)
+	var result []uint32
+	if c.custom != nil {
+		result = append(result, c.custom.Match(input)...)
+	}
 	for i, m := range c.matchers {
 		if m.MatchAny(input) {
 			result = append(result, c.values[i])
@@ -147,6 +142,9 @@ func (c *CompactDomainMatcher) Match(input string) []uint32 {
 
 // MatchAny implements DomainMatcher.
 func (c *CompactDomainMatcher) MatchAny(input string) bool {
+	if c.custom != nil && c.custom.MatchAny(input) {
+		return true
+	}
 	for _, m := range c.matchers {
 		if m.MatchAny(input) {
 			return true
diff --git a/common/geodata/domain_matcher_test.go b/common/geodata/domain_matcher_test.go
new file mode 100644
index 00000000..775b3371
--- /dev/null
+++ b/common/geodata/domain_matcher_test.go
@@ -0,0 +1,50 @@
+package geodata
+
+import (
+	"path/filepath"
+	"reflect"
+	"slices"
+	"testing"
+
+	"github.com/xtls/xray-core/common/geodata/strmatcher"
+)
+
+func TestCompactDomainMatcher_PreservesCustomRuleIndices(t *testing.T) {
+	factory := &CompactDomainMatcherFactory{shared: make(map[string]strmatcher.MatcherGroup)}
+	matcher, err := factory.BuildMatcher([]*DomainRule{
+		{Value: &DomainRule_Custom{Custom: &Domain{Type: Domain_Full, Value: "example.com"}}},
+		{Value: &DomainRule_Custom{Custom: &Domain{Type: Domain_Domain, Value: "example.com"}}},
+	})
+	if err != nil {
+		t.Fatalf("BuildMatcher() failed: %v", err)
+	}
+
+	got := matcher.Match("example.com")
+	slices.Sort(got)
+
+	want := []uint32{0, 1}
+	if !reflect.DeepEqual(got, want) {
+		t.Fatalf("Match() = %v, want %v", got, want)
+	}
+}
+
+func TestCompactDomainMatcher_PreservesMixedRuleIndices(t *testing.T) {
+	t.Setenv("xray.location.asset", filepath.Join("..", "..", "resources"))
+
+	factory := &CompactDomainMatcherFactory{shared: make(map[string]strmatcher.MatcherGroup)}
+	matcher, err := factory.BuildMatcher([]*DomainRule{
+		{Value: &DomainRule_Geosite{Geosite: &GeoSiteRule{File: DefaultGeoSiteDat, Code: "CN"}}},
+		{Value: &DomainRule_Custom{Custom: &Domain{Type: Domain_Full, Value: "163.com"}}},
+	})
+	if err != nil {
+		t.Fatalf("BuildMatcher() failed: %v", err)
+	}
+
+	got := matcher.Match("163.com")
+	slices.Sort(got)
+
+	want := []uint32{0, 1}
+	if !reflect.DeepEqual(got, want) {
+		t.Fatalf("Match() = %v, want %v", got, want)
+	}
+}